Name
Abstract | ||
|---|---|---|
Tag sequencing using high-throughput sequencing technologies are now regularly employed to identify specific sequence features, such as transcription factor binding sites (ChIP-seq) or regions of open chromatin (DNase-seq). To intuitively summarize and display individual sequence data as an accurate and interpretable signal, we developed F-Seq, a software package that generates a continuous tag sequence density estimation allowing identification of biologically meaningful sites whose output can be displayed directly in the UCSC Genome Browser. |
Year | DOI | Venue |
|---|---|---|
2008 | 10.1093/bioinformatics/btn480 | BIOINFORMATICS |
Keywords | Field | DocType |
density estimation,sequence tagged sites,high throughput,chip,genome,chromatin immunoprecipitation,transcription factor binding site | Peak calling,Genome,DNA binding site,Computer science,Genome browser,DNase-Seq,Software,Sequence-tagged site,Bioinformatics,Java | Journal |
Volume | Issue | ISSN |
24 | 21 | 1367-4803 |
Citations | PageRank | References |
27 | 3.18 | 0 |
Authors | ||
4 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Alan P. Boyle | 1 | 27 | 3.52 |
| Justin Guinney | 2 | 137 | 11.09 |
| Gregory E. Crawford | 3 | 27 | 3.18 |
| Terrence S. Furey | 4 | 1292 | 228.46 |