Title
Visual DSD: a design and analysis tool for DNA strand displacement systems.
Abstract
The Visual DSD (DNA Strand Displacement) tool allows rapid prototyping and analysis of computational devices implemented using DNA strand displacement, in a convenient web-based graphical interface. It is an implementation of the DSD programming language and compiler described by Lakin et al. (2011) with additional features such as support for polymers of unbounded length. It also supports stochastic and deterministic simulation, construction of continuous-time Markov chains and various export formats which allow models to be analysed using third-party tools.
Year
DOI
Venue
2011
10.1093/bioinformatics/btr543
BIOINFORMATICS
Keywords
Field
DocType
nucleic acid hybridization,programming languages,computer graphics,dna
Rapid prototyping,Computer science,Deterministic simulation,Markov chain,Compiler,Graphical user interface,Software,Bioinformatics,OS X,Computer graphics
Journal
Volume
Issue
ISSN
27
22
1367-4803
Citations 
PageRank 
References 
13
0.89
6
Authors
5
Name
Order
Citations
PageRank
Matthew R. Lakin17910.99
Simon Youssef2231.59
Filippo Polo3130.89
Stephen Emmott4485.05
Andrew Phillips522717.50