Title
ATMAD: robust image analysis for Automatic Tissue MicroArray De-arraying.
Abstract
We developed a novel de-arraying approach for TMA analysis. By combining wavelet-based detection, active contour segmentation, and thin-plate spline interpolation, our approach is able to handle TMA images with high dynamic, poor signal-to-noise ratio, complex background and non-linear deformation of TMA grid. In addition, the deformation estimation produces quantitative information to asset the manufacturing quality of TMAs.
Year
DOI
Venue
2018
10.1186/s12859-018-2111-8
BMC Bioinformatics
Keywords
Field
DocType
Active contour,Deformation,Detection,Segmentation,TMA de-arraying,Thin-plate spline,Tissue microarray,Wavelet
Active contour model,Computer vision,Bottleneck,Segmentation,Multiplex,Tissue microarray,Artificial intelligence,Engineering,DNA microarray,Manufacturing process,Grid
Journal
Volume
Issue
ISSN
19
1
1471-2105
Citations 
PageRank 
References 
0
0.34
17
Authors
4
Name
Order
Citations
PageRank
Hoai-Nam Nguyen101.01
Vincent Paveau211.03
Cyril Cauchois311.03
Charles Kervrann493467.36