Title
SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences.
Abstract
The results suggest that SWIFOLD can be a serious contender for accelerating the SW alignment of DNA sequences of unrestricted size in an affordable way reaching on average 125 GCUPS and almost a peak of 270 GCUPS.
Year
DOI
Venue
2018
10.1186/s12918-018-0614-6
BMC Systems Biology
Keywords
Field
DocType
DNA,FPGA,High-performance computing,OpenCL,Smith-Waterman
Graphics,Biology,Supercomputer,Xeon Phi,Parallel computing,Systems biology,Cell biology,Field-programmable gate array,Smith–Waterman algorithm,DNA sequencing,Speedup
Journal
Volume
Issue
ISSN
12
5
1752-0509
Citations 
PageRank 
References 
6
0.41
15
Authors
6
Name
Order
Citations
PageRank
Enzo Rucci1345.19
Carlos Garcia2659.95
Guillermo Botella329425.97
Armando Giusti47121.17
Marcelo R. Naiouf5307.29
Manuel Prieto634931.23