| Clair3-trio: high-performance Nanopore long-read variant calling in family trios with trio-to-trio deep neural networks | 0 | 0.34 | 2022 |
| Exploring The Limit Of Using A Deep Neural Network On Pileup Data For Germline Variant Calling | 1 | 0.34 | 2020 |
| Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long reads | 0 | 0.34 | 2020 |
| MegaPath: Low-Similarity Pathogen Detection from Metagenomic NGS Data (Extended Abstract) | 0 | 0.34 | 2018 |
| Compressing Dictionary Matching Index via Sparsification Technique | 4 | 0.43 | 2015 |
| MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. | 46 | 1.92 | 2015 |
| SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads. | 11 | 0.63 | 2014 |
| GPU-Accelerated BWT Construction for Large Collection of Short Reads. | 10 | 0.94 | 2014 |
| MICA: A fast short-read aligner that takes full advantage of Intel Many Integrated Core Architecture (MIC). | 0 | 0.34 | 2014 |
| Competitive online algorithms for multiple-machine power management and weighted flow time | 0 | 0.34 | 2013 |
| Online Speed Scaling Based on Active Job Count to Minimize Flow Plus Energy. | 3 | 0.40 | 2013 |
| Scheduling for weighted flow time and energy with rejection penalty | 10 | 0.60 | 2013 |
| SOAPfusion: a robust and effective computational fusion discovery tool for RNA-seq reads. | 2 | 0.41 | 2013 |
| A local structural prediction algorithm for RNA triple helix structure | 0 | 0.34 | 2013 |
| Nonclairvoyant sleep management and flow-time scheduling on multiple processors | 2 | 0.38 | 2013 |
| Memory Efficient Algorithms for Structural Alignment of RNAs with Pseudoknots | 3 | 0.41 | 2012 |
| An efficient alignment algorithm for searching simple pseudoknots over long genomic sequence. | 0 | 0.34 | 2012 |
| Improved multi-processor scheduling for flow time and energy | 7 | 0.54 | 2012 |
| Efficient SNP-sensitive alignment and database-assisted SNP calling for low coverage samples | 0 | 0.34 | 2012 |
| SOAP3: ultra-fast GPU-based parallel alignment tool for short reads. | 75 | 3.10 | 2012 |
| Algorithms for pseudoknot classification | 0 | 0.34 | 2011 |
| Sleep management on multiple machines for energy and flow time | 6 | 0.44 | 2011 |
| Non-clairvoyant Weighted Flow Time Scheduling on Different Multi-processor Models | 1 | 0.36 | 2011 |
| Edit distance to monotonicity in sliding windows | 3 | 0.45 | 2011 |
| Cache-oblivious index for approximate string matching | 4 | 0.38 | 2011 |
| Approximating Frequent Items In Asynchronous Data Stream Over A Sliding Window | 3 | 0.39 | 2011 |
| Structural Alignment of RNA with Complex Pseudoknot Structure | 1 | 0.39 | 2011 |
| RNASAlign: RNA Structural Alignment System. | 2 | 0.35 | 2011 |
| Energy-efficient due date scheduling | 1 | 0.34 | 2011 |
| Detection of novel tandem duplication with next-generation sequencing | 1 | 0.51 | 2011 |
| Tradeoff between energy and throughput for online deadline scheduling | 10 | 0.66 | 2010 |
| Correcting short reads with high error rates for improved sequencing result | 2 | 0.54 | 2009 |
| Succinct Index for Dynamic Dictionary Matching | 9 | 0.55 | 2009 |
| Sleep with Guilt and Work Faster to Minimize Flow Plus Energy | 16 | 0.71 | 2009 |
| Approximating Frequent Items in Asynchronous Data Stream over a Sliding Window | 1 | 0.35 | 2009 |
| The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning | 0 | 0.34 | 2009 |
| Succinct Text Indexing with Wildcards | 16 | 0.68 | 2009 |
| High Throughput Short Read Alignment via Bi-directional BWT | 44 | 2.03 | 2009 |
| Dynamic bin packing of unit fractions items | 21 | 0.97 | 2008 |
| Extra Unit-Speed Machines Are Almost as Powerful as Speedy Machines for Flow Time Scheduling | 0 | 0.34 | 2008 |
| Non-overlapping Common Substrings Allowing Mutations | 0 | 0.34 | 2008 |
| Speed Scaling Functions for Flow Time Scheduling Based on Active Job Count | 46 | 1.98 | 2008 |
| Scheduling for Speed Bounded Processors | 64 | 2.53 | 2008 |
| Nonmigratory Multiprocessor Scheduling for Response Time and Energy | 5 | 0.41 | 2008 |
| Online deadline scheduling with bounded energy efficiency | 8 | 0.52 | 2007 |
| An experimental study of compressed indexing and local alignments of DNA | 0 | 0.34 | 2007 |
| Energy efficient deadline scheduling in two processor systems | 16 | 0.84 | 2007 |
| A Space and Time Efficient Algorithm for Constructing Compressed Suffix Arrays | 30 | 7.03 | 2007 |
| Finding Alternative Splicing Patterns with Strong Support From Expressed Sequences | 0 | 0.34 | 2007 |
| Efficiency of Data Distribution in BitTorrent-Like Systems | 2 | 0.41 | 2007 |
