| GoSynthetic database tool to analyse natural and engineered molecular processes. | 1 | 0.36 | 2013 |
| PlanktoVision--an automated analysis system for the identification of phytoplankton. | 9 | 0.42 | 2013 |
| Integration of Boolean models exemplified on hepatocyte signal transduction. | 5 | 0.53 | 2012 |
| Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum. | 3 | 0.42 | 2012 |
| Robustness and accuracy of functional modules in integrated network analysis. | 5 | 0.49 | 2012 |
| Time-resolved in silico modeling of fine-tuned cAMP signaling in platelets: feedback loops, titrated phosphorylations and pharmacological modulation. | 7 | 0.50 | 2011 |
| The IronChip evaluation package: a package of perl modules for robust analysis of custom microarrays. | 9 | 0.35 | 2010 |
| BioNet: an R-Package for the functional analysis of biological networks. | 30 | 1.97 | 2010 |
| JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes. | 16 | 0.37 | 2009 |
| Modeling system states in liver cells: survival, apoptosis and their modifications in response to viral infection. | 8 | 0.95 | 2009 |
| Identifying functional modules in protein-protein interaction networks: an integrated exact approach. | 94 | 3.58 | 2008 |
| ProfDistS: (profile-) distance based phylogeny on sequence--structure alignments. | 5 | 0.52 | 2008 |
| Modelling phagosomal lipid networks that regulate actin assembly. | 8 | 0.52 | 2008 |
| The Its2 Database Ii: Homology Modelling Rna Structure For Molecular Systematics | 3 | 0.43 | 2008 |
| Deep Metazoan Phylogeny. | 1 | 0.38 | 2007 |
| Integrated network reconstruction, visualization and analysis using YANAsquare. | 33 | 1.57 | 2007 |
| The Internal Transcribed Spacer 2 Database - A Web Server For (Not Only) Low Level Phylogenetic Analyses | 6 | 0.60 | 2006 |
| XML schemas for common bioinformatic data types and their application in workflow systems. | 41 | 1.25 | 2006 |
| 4SALE - A tool for synchronous RNA sequence and secondary structure alignment and editing. | 31 | 0.63 | 2006 |
| inGeno--an integrated genome and ortholog viewer for improved genome to genome comparisons. | 22 | 0.39 | 2006 |
| Modelling interaction sites in protein domains with interaction profile hidden Markov models. | 15 | 0.85 | 2006 |
| CBCAnalyzer: inferring phylogenies based on compensatory base changes in RNA secondary structures. | 4 | 0.61 | 2005 |
| YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities. | 47 | 1.79 | 2005 |
| L1base: From Functional Annotation To Prediction Of Active Line-1 Elements | 5 | 0.66 | 2005 |
| ProfDist: a tool for the construction of large phylogenetic trees based on profile distances. | 2 | 0.42 | 2005 |
| An Open Source Protein Gel Documentation System for Proteome Analyses. | 1 | 2.25 | 2004 |
| Robust estimation of the phylogeny of Chlorophyceae(Chlorophyta)based on profile distances | 0 | 0.34 | 2003 |
