Mathieu Blanchette

Author Info

Name	Affiliation	Papers
MATHIEU BLANCHETTE	Centre de recherches mathématiques, Université de Montréal, CP 6128 Succursale Centre-ville, Montréal, Québec H3C 3J7	59
Collaborators	Citations	PageRank
76	631	62.65
Referers	Referees	References
1264	837	426

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Publications (59 rows)

Collaborators (76 rows)

Referers (100 rows)

Referees (100 rows)

Title	Citations	PageRank	Year
Neural representation and generation for RNA secondary structures	0	0.34	2021
oRNAment: a database of putative RNA binding protein target sites in the transcriptomes of model species.	0	0.34	2020
Mycorrhiza: Genotype Assignment using Phylogenetic Networks.	0	0.34	2020
EvoLSTM: context-dependent models of sequence evolution using a sequence-to-sequence LSTM.	1	0.35	2020
Large-scale mammalian genome rearrangements coincide with chromatin interactions.	0	0.34	2019
Prediction of mRNA subcellular localization using deep recurrent neural networks.	1	0.35	2019
[Regular Paper] Detection of Errors in Multi-genome Alignments Using Machine Learning Approaches	0	0.34	2018
RLALIGN: A Reinforcement Learning Approach for Multiple Sequence Alignment	0	0.34	2018
CoreTracker: accurate codon reassignment prediction, applied to mitochondrial genomes.	2	0.36	2017
Lessons from an Online Massive Genomics Computer Game.	1	0.36	2017
Prediction of Cell Type Specific Transcription Factor Binding Site Occupancy.	0	0.34	2016
Models and Algorithms for Genome Rearrangement with Positional Constraints	4	0.55	2015
Phylo and Open-Phylo: A Human-Computing Platform for Comparative Genomics.	0	0.34	2014
SPARCS: a web server to analyze (un)structured regions in coding RNA sequences.	1	0.35	2013
Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sites.	7	0.41	2012
A flexible ancestral genome reconstruction method based on gapped adjacencies.	21	0.70	2012
Clique Cover on Sparse Networks.	2	0.41	2012
Mapping association between long-range cis-regulatory regions and their target genes using synteny.	0	0.34	2011
A probabilistic model for sequence alignment with context-sensitive indels.	3	0.41	2011
Predicting site-specific human selective pressure using evolutionary signatures.	3	0.46	2011
Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling.	32	3.01	2011
Ancestors 1.0: a web server for ancestral sequence reconstruction.	4	0.44	2010
Mapping association between long-range cis-regulatory regions and their target genes using comparative genomics	0	0.34	2010
Reconstruction of ancestral genome subject to whole genome duplication, speciation, rearrangement and loss	11	0.69	2010
A practical algorithm for estimation of the maximum likelihood ancestral reconstruction error.	0	0.34	2010
Computational Analysis of Whole-Genome Differential Allelic Expression Data in Human.	2	0.43	2010
Predicting direct protein interactions from affinity purification mass spectrometry data	3	0.42	2010
Detection of locally over-represented GO terms in protein-protein interaction networks.	6	0.55	2010
A Whole Genome Study and Identification of Specific Carcinogenic Regions of the Human Papilloma Viruses.	2	0.44	2009
Genetic map refinement using a comparative genomic approach.	3	0.47	2009
Seeder: discriminative seeding DNA motif discovery.	12	0.61	2008
An Evolutionary Study of the Human Papillomavirus Genomes	1	0.37	2008
Improving the prediction of mRNA extremities in the parasitic protozoan Leishmania.	0	0.34	2008
A Phylogenetic Approach to Genetic Map Refinement	1	0.37	2008
Exact and Heuristic Algorithms for the Indel Maximum Likelihood Problem.	11	0.97	2007
Premod: A Database Of Genome-Wide Mammalian Cis-Regulatory Module Predictions	14	1.07	2007
Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees.	34	1.15	2007
Gene maps linearization using genomic rearrangement distances.	8	0.59	2007
FootPrinter3: phylogenetic footprinting in partially alignable sequences.	6	0.56	2006
Common substrings in random strings	0	0.34	2006
Ordering partially assembled genomes using gene arrangements	10	0.65	2006
On the inference of parsimonious indel evolutionary scenarios.	11	0.89	2006
Inferring gene orders from gene maps using the breakpoint distance	1	0.36	2006
Finding maximum likelihood indel scenarios	4	0.55	2006
Reconstructing Ancestral Gene Orders Using Conserved Intervals	28	1.35	2004
Into the heart of darkness: large-scale clustering of human non-coding DNA.	3	1.17	2004
PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences.	68	4.15	2004
FootPrinter: A program designed for phylogenetic footprinting.	36	1.73	2003
A comparative analysis method for detecting binding sites in coding regions	3	0.54	2003
An Empirical Comparison of Tools for Phylogenetic Footprinting	3	1.14	2003

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