| GuiltyTargets: Prioritization of Novel Therapeutic Targets With Network Representation Learning | 0 | 0.34 | 2022 |
| Covid-19 Knowledge Graph: A Computable, Multi-Modal, Cause-And-Effect Knowledge Model Of Covid-19 Pathophysiology | 0 | 0.34 | 2021 |
| The Covid-19 Ontology | 1 | 0.39 | 2021 |
| Multipaths: A Python Framework For Analyzing Multi-Layer Biological Networks Using Diffusion Algorithms | 0 | 0.34 | 2021 |
| Drug2ways: Reasoning over causal paths in biological networks for drug discovery | 1 | 0.37 | 2020 |
| PS4DR: a multimodal workflow for identification and prioritization of drugs based on pathway signatures. | 0 | 0.34 | 2020 |
| CTO - A Community-Based Clinical Trial Ontology and Its Applications in PubChemRDF and SCAIView. | 0 | 0.34 | 2020 |
| Re-curation and Rational Enrichment of Knowledge Graphs in Biological Expression Language | 0 | 0.34 | 2019 |
| PathMe: Merging and exploring mechanistic pathway knowledge | 1 | 0.36 | 2019 |
| PTSD Biomarker Database: Deep Dive Meta-database for PTSD Biomarkers, Visualizations, and Analysis Tools | 0 | 0.34 | 2019 |
| Quantifying mechanisms in neurodegenerative diseases (NDDs) using candidate mechanism perturbation amplitude (CMPA) algorithm. | 0 | 0.34 | 2019 |
| BEL2ABM: agent-based simulation of static models in Biological Expression Language. | 0 | 0.34 | 2018 |
| A systematic approach for identifying shared mechanisms in epilepsy and its comorbidities. | 1 | 0.36 | 2018 |
| BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language. | 0 | 0.34 | 2018 |
| Converting Alzheimer's Disease Map into a Heavyweight Ontology - A Formal Network to Integrate Data. | 0 | 0.34 | 2018 |
| Multimodal Mechanistic Signatures for Neurodegenerative Diseases (NeuroMMSig): a web server for mechanism enrichment. | 4 | 0.59 | 2017 |
| NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease. | 2 | 0.41 | 2016 |
| Reasoning over genetic variance information in cause-and-effect models of neurodegenerative diseases. | 3 | 0.62 | 2016 |
| NeuroTransDB: highly curated and structured transcriptomic metadata for neurodegenerative diseases. | 2 | 0.42 | 2015 |
| Construction of biological networks from unstructured information based on a semi-automated curation workflow. | 8 | 0.46 | 2015 |
| CSEO - the Cigarette Smoke Exposure Ontology. | 1 | 0.40 | 2014 |
| 'HypothesisFinder:' a strategy for the detection of speculative statements in scientific text. | 10 | 0.55 | 2013 |
| HuPSON: the human physiology simulation ontology. | 3 | 0.49 | 2013 |
| SCAI: Extracting drug-drug interactions using a rich feature vector | 9 | 0.57 | 2013 |
| BEL Networks Derived from Qualitative Translations of BioNLP Shared Task Annotations | 3 | 0.40 | 2013 |
| Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports. | 48 | 1.78 | 2012 |
| A new optimization phase for scientific workflow management systems. | 9 | 0.59 | 2012 |
| Mining biomarker information in biomedical literature. | 13 | 0.63 | 2012 |
| ADO: A formal ontology for understanding structure of information and domain knowledge of Alzheimer's disease. | 0 | 0.34 | 2012 |
| Information Retrieval Framework for Technology Survey in Biomedical and Chemistry Literature. | 3 | 0.43 | 2011 |
| Information Retrieval Framework for Technology Survey in Biomedical and Chemistry Literature. | 3 | 0.43 | 2011 |
| PLIO: an ontology for formal description of protein-ligand interactions. | 4 | 0.41 | 2011 |
| Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers. | 19 | 0.83 | 2011 |
| A Semantic Platform for Information Retrieval from E-Health Records. | 0 | 0.34 | 2011 |
| A Semantic Platform for Information Retrieval from E-Health Records. | 0 | 0.34 | 2011 |
| A UNICORE Plugin for HPC-Enabled Scientific Workflows in Taverna 2.2 | 5 | 0.91 | 2011 |
| DockFlow: Achieving interoperability of protein docking tools across heterogeneous Grid middleware | 2 | 0.40 | 2010 |
| Prior Art Search in Chemistry Patents Based On Semantic Concepts and Co-Citation Analysis. | 4 | 0.45 | 2010 |
| Abstracts versus full texts and patents: a quantitative analysis of biomedical entities | 5 | 0.48 | 2010 |
| DockFlow - a prototypic PharmaGrid for virtual screening integrating four different docking tools. | 2 | 0.38 | 2009 |
| Identification of histone modifications in biomedical text for supporting epigenomic research. | 17 | 0.48 | 2009 |
| Concept-based semi-automatic classification of drugs. | 9 | 0.66 | 2009 |
| Patent Retrieval in Chemistry Based on Semantically Tagged Named Entities. | 5 | 0.55 | 2009 |
| A robust framework for rapid deployment of a virtual screening laboratory. | 0 | 0.34 | 2009 |
| Detection of IUPAC and IUPAC-like chemical names. | 55 | 2.02 | 2008 |
| Virtual high throughput screening (vHTS) on an optical high speed testbed. | 0 | 0.34 | 2008 |
| Public microarray repository semantic annotation with ontologies employing text mining and expression profile correlation | 28 | 0.41 | 2008 |
| The @neurIST project. | 4 | 1.03 | 2008 |
| Initial Results On Knowledge Discovery And Decision Support For Intracranial Aneurysms | 2 | 0.55 | 2008 |
| OSIRISv1.2: A named entity recognition system for sequence variants of genes in biomedical literature. | 39 | 0.73 | 2008 |
