| metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes | 0 | 0.34 | 2022 |
| The String Database In 2021: Customizable Protein-Protein Networks, And Functional Characterization Of User-Uploaded Gene/Measurement Sets | 6 | 0.52 | 2021 |
| Ogee V3: Online Gene Essentiality Database With Increased Coverage Of Organisms And Human Cell Lines | 1 | 0.35 | 2021 |
| Smart: Recent Updates, New Developments And Status In 2020 | 0 | 0.34 | 2021 |
| Interactive Tree Of Life (Itol) V5: An Online Tool For Phylogenetic Tree Display And Annotation | 0 | 0.34 | 2021 |
| The Interpro Protein Families And Domains Database: 20 Years On | 1 | 0.40 | 2021 |
| Identification of metabolites from tandem mass spectra with a machine learning approach utilizing structural features. | 0 | 0.34 | 2020 |
| proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes | 0 | 0.34 | 2020 |
| Eggnog 5.0: A Hierarchical, Functionally And Phylogenetically Annotated Orthology Resource Based On 5090 Organisms And 2502 Viruses | 0 | 0.34 | 2019 |
| Interactive Tree Of Life (iTOL) v4: recent updates and new developments. | 1 | 0.39 | 2019 |
| String V11: Protein-Protein Association Networks With Increased Coverage, Supporting Functional Discovery In Genome-Wide Experimental Datasets | 29 | 1.18 | 2019 |
| InterPro in 2019: improving coverage, classification and access to protein sequence annotations. | 3 | 0.37 | 2019 |
| iPath3.0: interactive pathways explorer v3. | 0 | 0.34 | 2018 |
| 20 Years Of The Smart Protein Domain Annotation Resource | 8 | 0.57 | 2018 |
| MVP: a microbe-phage interaction database. | 1 | 0.35 | 2018 |
| Interpro In 2017-Beyond Protein Family And Domain Annotations | 48 | 1.90 | 2017 |
| Progenomes: A Resource For Consistent Functional And Taxonomic Annotations Of Prokaryotic Genomes | 4 | 0.44 | 2017 |
| RTK: efficient rarefaction analysis of large datasets. | 0 | 0.34 | 2017 |
| Systematic identification of phosphorylation-mediated protein interaction switches. | 0 | 0.34 | 2017 |
| The String Database In 2017: Quality-Controlled Protein-Protein Association Networks, Made Broadly Accessible | 60 | 2.46 | 2017 |
| STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data. | 24 | 0.93 | 2016 |
| The Sider Database Of Drugs And Side Effects | 72 | 2.35 | 2016 |
| MOCAT2: a metagenomic assembly, annotation and profiling framework. | 7 | 0.52 | 2016 |
| CART-a chemical annotation retrieval toolkit. | 2 | 0.39 | 2016 |
| PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins. | 5 | 0.46 | 2015 |
| Smart: Recent Updates, New Developments And Status In 2015 | 26 | 1.23 | 2015 |
| Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. | 5 | 0.46 | 2015 |
| The Interpro Protein Families Database: The Classification Resource After 15 Years | 84 | 3.64 | 2015 |
| Stitch 4: Integration Of Protein-Chemical Interactions With User Data | 52 | 2.19 | 2014 |
| Eggnog V4.0: Nested Orthology Inference Across 3686 Organisms | 35 | 1.69 | 2014 |
| Human Monogenic Disease Genes Have Frequently Functionally Redundant Paralogs | 4 | 0.62 | 2013 |
| PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins. | 22 | 0.99 | 2013 |
| DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data. | 10 | 0.73 | 2013 |
| Interpro In 2011: New Developments In The Family And Domain Prediction Database | 138 | 7.64 | 2012 |
| eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges. | 42 | 2.01 | 2012 |
| Stitch 3: Zooming In On Protein-Chemical Interactions | 53 | 1.98 | 2012 |
| SMART 7: recent updates to the protein domain annotation resource. | 40 | 2.60 | 2012 |
| Ipath2.0: Interactive Pathway Explorer | 18 | 0.91 | 2011 |
| Prediction Of Drug Combinations By Integrating Molecular And Pharmacological Data | 38 | 1.93 | 2011 |
| Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. | 41 | 2.04 | 2011 |
| The String Database In 2011: Functional Interaction Networks Of Proteins, Globally Integrated And Scored | 266 | 11.27 | 2011 |
| STITCH 2: an interaction network database for small molecules and proteins. | 36 | 3.60 | 2010 |
| Drug-Induced Regulation Of Target Expression | 30 | 1.91 | 2010 |
| SmashCell: a software framework for the analysis of single-cell amplified genome sequences | 1 | 0.48 | 2010 |
| Seltarbase, A Database Of Human Mononucleotide-Microsatellite Mutations And Their Potential Impact To Tumorigenesis And Immunology | 0 | 0.34 | 2010 |
| Eggnog V2.0: Extending The Evolutionary Genealogy Of Genes With Enhanced Non-Supervised Orthologous Groups, Species And Functional Annotations | 43 | 2.68 | 2010 |
| SmashCommunity: a metagenomic annotation and analysis tool. | 13 | 1.32 | 2010 |
| Smart 6: Recent Updates And New Developments | 61 | 3.68 | 2009 |
| String 8-A Global View On Proteins And Their Functional Interactions In 630 Organisms | 234 | 14.45 | 2009 |
| SuperTarget and Matador: resources for exploring drug-target relationships. | 101 | 5.71 | 2008 |
